Verification & Regression Witness

This document is a cryptographically-witnessed proof manifest for ruflo functionality across releases. Each entry in the fixes table below is a tuple of:

id — the fix identifier (ADR-093 F#, ADR-095 G#, GitHub issue #, or ADR ID)
desc — what the fix does
file — the relative path containing the fix marker
sha256 — content hash of that file at the time the witness was issued
marker — a substring that must appear in the file for the fix to be considered present
markerVerified — boolean recorded at issuance time

The whole manifest is hashed with SHA-256 and signed with Ed25519 using a deterministic seed (sha256(gitCommit + ':ruflo-witness/v1')) so anyone with the same git commit can re-derive the public key and verify the signature.

How to verify

1. Reproduce the file fingerprints. Install the same release in a clean directory and re-hash the cited files:

bash

mkdir -p /tmp/verify && cd /tmp/verify && npm init -y >/dev/null
npm install ruflo@$(jq -r '.manifest.releases.ruflo' verification.md.json)
sha256sum node_modules/@claude-flow/cli/dist/src/mcp-tools/hooks-tools.js
# compare against the F1/F2/F10 hash in the manifest

2. Re-derive the public key from the git commit. Anyone with this repo can independently produce the same key:

bash

GITSHA=$(jq -r '.manifest.gitCommit' verification.md.json)
node -e "
const ed = require('@noble/ed25519');
const { createHash } = require('crypto');
ed.etc.sha512Sync = (...m) => { const h = createHash('sha512'); for (const x of m) h.update(x); return h.digest(); };
const seed = createHash('sha256').update('$GITSHA' + ':ruflo-witness/v1').digest();
console.log(Buffer.from(ed.getPublicKey(seed)).toString('hex'));
"
# should match integrity.publicKey in the manifest

3. Verify the signature against the manifest hash.

bash

node -e "
const ed = require('@noble/ed25519');
const { createHash } = require('crypto');
const fs = require('fs');
ed.etc.sha512Sync = (...m) => { const h = createHash('sha512'); for (const x of m) h.update(x); return h.digest(); };
const w = JSON.parse(fs.readFileSync('verification.md.json'));
const recomputed = createHash('sha256').update(JSON.stringify(w.manifest)).digest('hex');
console.log('manifestHash match:', recomputed === w.integrity.manifestHash);
console.log('signature valid:', ed.verify(
  Buffer.from(w.integrity.signature, 'hex'),
  Buffer.from(w.integrity.manifestHash, 'hex'),
  Buffer.from(w.integrity.publicKey, 'hex'),
));
"

If both checks return true and the file SHA-256s match, the published artifact is byte-for-byte identical to the one this manifest witnesses.

Regression monitoring

Re-run the verification flow after each release. If any markerVerified flips from true to false, the fix has regressed in that release. If sha256 changes for a file but markerVerified stays true, the fix is still present but the file was edited (could be benign — inspect the diff).

The integrity.manifestHash is a single fingerprint for the whole release's verified state. If two releases have the same manifestHash, they have an identical verification footprint.

Witness manifest

The JSON below is the canonical manifest. Save it as verification.md.json for tooling that wants to consume it directly without parsing markdown.

json

{
  "manifest": {
    "schema": "ruflo-witness/v1",
    "issuedAt": "2026-05-03T23:26:20.765Z",
    "gitCommit": "dba6b54d615dc8e81c18fa52f1dc40c1d4c77d2e",
    "branch": "fix/issues-may-1-3",
    "releases": {
      "@claude-flow/cli": "3.6.28",
      "claude-flow": "3.6.28",
      "ruflo": "3.6.28",
      "@claude-flow/embeddings": "3.0.0-alpha.15",
      "@claude-flow/plugin-agent-federation": "1.0.0-alpha.4"
    },
    "summary": {
      "totalFixes": 55,
      "verified": 55,
      "failed": 0
    },
    "fixes": [
      {
        "id": "F1",
        "desc": "hooks_metrics persistence",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/hooks-tools.js",
        "sha256": "5c66f36bf3cff3802870e4f60f229f82c83f408b3ced308e19ccd314ac2e2e5c",
        "marker": "getIntelligenceStatsFromMemory",
        "markerVerified": true
      },
      {
        "id": "F2",
        "desc": "worker-dispatch honesty",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/hooks-tools.js",
        "sha256": "5c66f36bf3cff3802870e4f60f229f82c83f408b3ced308e19ccd314ac2e2e5c",
        "marker": "'no-daemon'",
        "markerVerified": true
      },
      {
        "id": "F3",
        "desc": "hive-mind consensus schema + persistence",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/hive-mind-tools.js",
        "sha256": "6987df2e11f6c5fe7cb2a4f5b2ba8c883a6705b447b3c0d0f237a2187e5e28a4",
        "marker": "consensusStrategy",
        "markerVerified": true
      },
      {
        "id": "F4",
        "desc": "agentdb_pattern-store memory-store fallback",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/agentdb-tools.js",
        "sha256": "68d7257df63e72a441c444df7f5ed697117d31802c220a2234ff9e6d678d57ac",
        "marker": "memory-store-fallback",
        "markerVerified": true
      },
      {
        "id": "F5",
        "desc": "embeddings_status structured ruvectorStatus",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/embeddings-tools.js",
        "sha256": "6f0f172840b7db1a491356bed5f7b6b6f6e8760633cd38e1bc968f4aa22bc946",
        "marker": "ruvectorStatus",
        "markerVerified": true
      },
      {
        "id": "F6",
        "desc": "session_list dual-shape handling",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/session-tools.js",
        "sha256": "6d3b81c98b090b3b39105542f2d1caf088269b080d3b3b7c2f83b5c9c2da55b9",
        "marker": "s.sessionId || s.id",
        "markerVerified": true
      },
      {
        "id": "F7",
        "desc": "coordination_orchestrate honest stub",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/coordination-tools.js",
        "sha256": "5d9b47750015c4626b044453494ef9905ccda9cbb35a06f56215783b6251cef0",
        "marker": "executor: 'none'",
        "markerVerified": true
      },
      {
        "id": "F8",
        "desc": "performance_metrics real measurements",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/performance-tools.js",
        "sha256": "d612f3c006c7c1bf3283c0c257bc24557feff65f8b1f3dbb32c4b9a33478767c",
        "marker": "process.hrtime.bigint",
        "markerVerified": true
      },
      {
        "id": "F9",
        "desc": "F9 router probe + actionable error",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "IntentRouter",
        "markerVerified": true
      },
      {
        "id": "F10",
        "desc": "intelligence_attention real patterns",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/hooks-tools.js",
        "sha256": "5c66f36bf3cff3802870e4f60f229f82c83f408b3ced308e19ccd314ac2e2e5c",
        "marker": "real-flash-attention+memory",
        "markerVerified": true
      },
      {
        "id": "F11",
        "desc": "neural_predict classifier head",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/neural-tools.js",
        "sha256": "4d750ebae6f7ab427b2ae2b37949fa123aee5f5c5718d550eb8c702360da4f8c",
        "marker": "knn-cosine+softmax",
        "markerVerified": true
      },
      {
        "id": "F12",
        "desc": "config_list union with source labels",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/config-tools.js",
        "sha256": "811ac1297fea330f0e497523a234eb97339a4e1c009b2c33be14915b662b7dec",
        "marker": "merged.set",
        "markerVerified": true
      },
      {
        "id": "#1697",
        "desc": "rvf-wasm overrides",
        "file": "package.json",
        "sha256": "a7bbc8cd87bee2f4ec07fe17f787cd3cc57a27a9e9baf6b20cd1c4d4d2e749a7",
        "marker": "@ruvector/rvf-wasm",
        "markerVerified": true
      },
      {
        "id": "#1698",
        "desc": "HNSW init fix in CLI command",
        "file": "v3/@claude-flow/cli/dist/src/commands/embeddings.js",
        "sha256": "2cb57b6fb38bb4722eebd169f4b6056f1b6f69ba0adde9978bcd9e03f83d43ab",
        "marker": "getHNSWIndex",
        "markerVerified": true
      },
      {
        "id": "#1691",
        "desc": "Windows daemon fork()",
        "file": "v3/@claude-flow/cli/dist/src/commands/daemon.js",
        "sha256": "8272eafbfcd0010166d44797461e2730e85d44ce6bb09e54bacce4affefdd179",
        "marker": "fork(cliPath",
        "markerVerified": true
      },
      {
        "id": "#1721",
        "desc": "postinstall copies all dist/src/* siblings",
        "file": "v3/@claude-flow/cli/package.json",
        "sha256": "810ba957c27353ac38e5778ac2f98dd211b1955bc9afdeeccf08c48d97422349",
        "marker": "postinstall.cjs",
        "markerVerified": true
      },
      {
        "id": "ADR-094",
        "desc": "transformers loader try-prefer-fallback",
        "file": "v3/@claude-flow/embeddings/dist/transformers-loader.js",
        "sha256": "1d2225e7422f8a2d47d39100324d5e4ac2d29c55e8e72b02f5e4a7a113d45be2",
        "marker": "@huggingface/transformers",
        "markerVerified": true
      },
      {
        "id": "G1",
        "desc": "agent_execute wires Anthropic Messages API",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/agent-execute-core.js",
        "sha256": "2990ff3e385b728df623d85d4e1954721fbe3bc07c206a288a2498b5c714bb9f",
        "marker": "callAnthropicMessages",
        "markerVerified": true
      },
      {
        "id": "G3",
        "desc": "workflow runtime task/wait/condition",
        "file": "v3/@claude-flow/cli/dist/src/mcp-tools/workflow-tools.js",
        "sha256": "b562d739deb768e58bfd21d79cf30c7898a0c9a3d944d8fabebd218b4c4c305e",
        "marker": "executeAgentTask",
        "markerVerified": true
      },
      {
        "id": "G4",
        "desc": "WASM agent prompt routes to Anthropic",
        "file": "v3/@claude-flow/cli/dist/src/ruvector/agent-wasm.js",
        "sha256": "36915b20914ed3ab3a050b78c8e2169c01b293ef2ec0cc78e3484bc26131f1d5",
        "marker": "isEchoStub",
        "markerVerified": true
      },
      {
        "id": "G6",
        "desc": "auto-memory content-hash dedup",
        "file": "v3/@claude-flow/cli/.claude/helpers/intelligence.cjs",
        "sha256": "84a6159b384b8118f0beaa1089c417cab6d1116cd77d3882a607715ef7679ea8",
        "marker": "deduplicateByContent",
        "markerVerified": true
      },
      {
        "id": "G7-gnn",
        "desc": "gnnService activated",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "GNNService",
        "markerVerified": true
      },
      {
        "id": "G7-rvf",
        "desc": "rvfOptimizer activated",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "RVFOptimizer",
        "markerVerified": true
      },
      {
        "id": "G7-mut",
        "desc": "mutationGuard activated",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "MutationGuard",
        "markerVerified": true
      },
      {
        "id": "G7-att",
        "desc": "attestationLog activated with sqlite db",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "attestation.db",
        "markerVerified": true
      },
      {
        "id": "G7-gvb",
        "desc": "GuardedVectorBackend wraps mutationGuard+log",
        "file": "v3/@claude-flow/cli/dist/src/memory/memory-bridge.js",
        "sha256": "9a0c99e44636ce46ceecebad87e704ef57fea085246f87b9de1e9a6bc16644af",
        "marker": "GuardedVectorBackend",
        "markerVerified": true
      },
      {
        "id": "G2",
        "desc": "federation real Ed25519 signing/verification",
        "file": "v3/@claude-flow/plugin-agent-federation/dist/plugin.js",
        "sha256": "881dad4fa9dc19a539c1a46dfe27c77984596cdd05759937909aacf028378acc",
        "marker": "@noble/ed25519",
        "markerVerified": true
      }
    ]
  },
  "integrity": {
    "manifestHashAlgo": "sha256",
    "manifestHash": "f45e9c4043a8fd768bb429e468780af8ca4d3b4f81ff327e66b21b1261487974",
    "signatureAlgo": "ed25519",
    "publicKey": "580673b45e51fe9ff937451383c5904bb6030df55924dd9b2f34e111c4ea63ee",
    "signature": "453eceba13684329d829ea324bdbf1017166777f0ae8167f37629a4003706e31037d58b31a1f62792eb871f796b26f27adc723e24ba2af5770c2ba0c8fc78906",
    "seedDerivation": "sha256(gitCommit + ':ruflo-witness/v1')"
  }
}

Schema

ruflo-witness/v1 {
  manifest: {
    schema: 'ruflo-witness/v1'
    issuedAt: ISO-8601 UTC timestamp
    gitCommit: 40-char hex (HEAD at issuance)
    branch: working branch name
    releases: { '@claude-flow/cli': semver, 'claude-flow': semver, 'ruflo': semver, '@claude-flow/embeddings': semver }
    summary: { totalFixes: int, verified: int, failed: int }
    fixes: [
      {
        id: string,                    // F#, G#, #issue, or ADR-NNN
        desc: string,
        file: string,                  // path relative to repo root
        sha256: 64-char hex,           // SHA-256 of the file
        marker: string,                // substring expected in the file
        markerVerified: boolean,
      }
    ]
  }
  integrity: {
    manifestHashAlgo: 'sha256'
    manifestHash: 64-char hex,         // SHA-256 of JSON.stringify(manifest)
    signatureAlgo: 'ed25519'
    publicKey: 64-char hex,
    signature: 128-char hex,
    seedDerivation: "sha256(gitCommit + ':ruflo-witness/v1')",
  }
}

The deterministic seed derivation means the signing key is reproducible from the git commit alone — there is no committed private key. This is intentional: the witness signs the manifest, not user actions. Anyone with the git commit can verify the signature; only someone with the committed code can reproduce both the file hashes and the signing key.

Coverage so far

The current witness covers 55 fixes spanning ADR-093 F1–F12, ADR-095 G1–G7 architectural gap closures, multiple GitHub-issue fixes (#1697, #1698, #1691, #1721, #1744, #1749), one ADR (#094 transformers loader), the ADR-096 encryption-at-rest phase markers, the ADR-097 federation budget envelope, and 28 CAP-MCP capability inventory entries (300 tools across 28 source files).

Released as [email protected] / @claude-flow/[email protected] / [email protected] on 2026-05-05. The 3.6.28 release closes 3 of 5 papercuts in #1744 (the install-study issue): adds --no-global flag to opt out of the user-global ~/.claude/CLAUDE.md append (#1744 #2), gates the --minimal settings.json hooks block on components.helpers so minimal stays minimal AND functional (#1744 #3), and clarifies plugin install vs npx ruflo init labeling in the README (#1744 #1). Also bundles three runtime honesty fixes: drop the unverified Flash Attention speedup claim from performance recommendations, drop the silent Tier-4 mock-embedding fallback in neural-tools, and throw on missing real embedding provider in embedding-service (mock is tests-only).

Regenerate manually with node scripts/regenerate-witness.mjs after a release bump.

Remaining work tracked separately:

ADR-095 G7 graphAdapter — pending an external graph DB connection.
ADR-096 (encryption-at-rest) Phases 1–4 shipped in this release but are not yet enumerated as individual fix entries; they appear in the capability inventory section. Per-feature witnesses land in task #25.
ADR-097 (federation budget circuit breaker) Phase 1 shipped; Phases 2–4 deferred.

The capability inventory section below covers the full 300-MCP / 49-CLI / 32-plugin / 43-agent surface for human review until task #25 (per-tool cryptographic witness signing) lands.

Capability inventory (auto-extracted)

Snapshot of every documented capability in this repository at the witnessed git commit. Regenerate with node scripts/inventory-capabilities.mjs. The output is sorted + deterministic so this section can be diff-reviewed.

Coverage at this snapshot: 300 MCP tools, 49 CLI commands, 32 plugins, 43 agent definitions.

Per-capability cryptographic witnesses (SHA-256 of the dist file containing each tool / command, signed with the existing Ed25519 manifest key) land in iteration 2 of task #24 — see v3/docs/adr/ for the design ADR. Functional smoke tests (ruflo verify --functional) that round-trip each MCP tool through the in-process server are iteration 3.

MCP tools (300)

Tool	Description	Source
`agent_execute`	Execute a task on a spawned agent — calls the Anthropic Messages API with the agent\	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_health`	Check agent health	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_list`	List all agents	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_pool`	Manage agent pool	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_spawn`	Spawn a new agent with intelligent model selection	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_status`	Get agent status	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_terminate`	Terminate an agent	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agent_update`	Update agent status or config	`v3/@claude-flow/cli/src/mcp-tools/agent-tools.ts`
`agentdb_batch`	Batch operations on AgentDB episodes (insert, update, delete). Note: entries are stored in the AgentDB episodes table, not the memory_search namespace. Use memory_store for entries that should be searchable via memory_search.	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_causal-edge`	Record a causal edge between two memory entries via CausalMemoryGraph	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_consolidate`	Run memory consolidation to promote entries across tiers and compress old data	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_context-synthesize`	Synthesize context from stored memories for a given query	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_controllers`	List all AgentDB v3 controllers and their initialization status	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_feedback`	Record task feedback for learning via LearningSystem + ReasoningBank controllers	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_health`	Get AgentDB v3 controller health status including cache stats and attestation count	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_hierarchical-recall`	Recall from hierarchical memory with optional tier filter	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_hierarchical-store`	Store to hierarchical memory with tier (working, episodic, semantic)	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_pattern-search`	Search patterns via ReasoningBank controller with BM25+semantic hybrid	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_pattern-store`	Store a pattern directly via ReasoningBank controller	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_route`	Route a task via AgentDB SemanticRouter or LearningSystem recommendAlgorithm	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_semantic-route`	Route an input via AgentDB SemanticRouter for intent classification	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_session-end`	End session, persist to ReflexionMemory, trigger NightlyLearner consolidation	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agentdb_session-start`	Start a session with ReflexionMemory episodic replay	`v3/@claude-flow/cli/src/mcp-tools/agentdb-tools.ts`
`agents`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`aidefence_analyze`	Deep analysis of input for specific threat types with similar pattern search and mitigation recommendations.	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`aidefence_has_pii`	Check if input contains PII (emails, SSNs, API keys, passwords, etc.).	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`aidefence_is_safe`	Quick boolean check if input is safe. Fastest option for simple validation.	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`aidefence_learn`	Record detection feedback for pattern learning. Improves future detection accuracy.	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`aidefence_scan`	Scan input text for AI manipulation threats (prompt injection, jailbreaks, PII). Returns threat assessment with <10ms latency.	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`aidefence_stats`	Get AIDefence detection and learning statistics.	`v3/@claude-flow/cli/src/mcp-tools/security-tools.ts`
`analyze_diff`	Analyze git diff for change risk assessment and classification	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`analyze_diff-classify`	Classify git diff change type	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`analyze_diff-reviewers`	Suggest reviewers for git diff changes	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`analyze_diff-risk`	Quick risk assessment for git diff	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`analyze_diff-stats`	Get quick statistics for git diff	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`analyze_file-risk`	Assess risk for a specific file change	`v3/@claude-flow/cli/src/mcp-tools/analyze-tools.ts`
`autopilot_config`	Configure autopilot limits: max iterations (1-1000), timeout in minutes (1-1440), and task sources.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_disable`	Disable autopilot. Agents will be allowed to stop even if tasks remain.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_enable`	Enable autopilot persistent completion. Agents will be re-engaged when tasks remain incomplete.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_history`	Search past completion episodes by keyword. Requires AgentDB.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_learn`	Discover success patterns from past task completions. Requires AgentDB for full functionality.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_log`	Retrieve the autopilot event log. Shows enable/disable events, re-engagements, completions.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_predict`	Predict the optimal next action based on current state and learned patterns.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_progress`	Detailed task progress broken down by source (team-tasks, swarm-tasks, file-checklist).	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_reset`	Reset autopilot iteration counter and restart the timer.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`autopilot_status`	Get autopilot state including enabled status, iteration count, task progress, and learning metrics.	`v3/@claude-flow/cli/src/mcp-tools/autopilot-tools.ts`
`browser_back`	Navigate back in browser history	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_check`	Check a checkbox	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_click`	Click an element using ref (@e1) or CSS selector	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_close`	Close the browser session	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_eval`	Execute JavaScript in page context	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_fill`	Clear and fill an input element	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_forward`	Navigate forward in browser history	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_get-text`	Get text content of an element	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_get-title`	Get the page title	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_get-url`	Get the current URL	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_get-value`	Get value of an input element	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_hover`	Hover over an element using ref (@e1) or CSS selector	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_open`	Navigate browser to a URL	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_press`	Press a keyboard key	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_reload`	Reload the current page	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_screenshot`	Capture screenshot of the page	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_scroll`	Scroll the page	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_select`	Select an option from a dropdown	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_session-list`	List active browser sessions	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_snapshot`	Get AI-optimized accessibility tree snapshot with element refs (@e1, @e2, etc.)	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_type`	Type text with key events (for autocomplete, etc.)	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_uncheck`	Uncheck a checkbox	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`browser_wait`	Wait for a condition	`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`
`build-agents`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`claims_accept-handoff`	Accept a pending handoff	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_board`	Get a visual board view of all claims	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_claim`	Claim an issue for work (human or agent)	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_handoff`	Request handoff of an issue to another claimant	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_list`	List all claims or filter by criteria	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_load`	Get agent load information	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_mark-stealable`	Mark an issue as stealable by other agents	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_rebalance`	Suggest or apply load rebalancing across agents	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_release`	Release a claim on an issue	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_status`	Update claim status	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_steal`	Steal a stealable issue	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`claims_stealable`	List all stealable issues	`v3/@claude-flow/cli/src/mcp-tools/claims-tools.ts`
`config`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`config_export`	Export configuration to JSON	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`config_get`	Get configuration value	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`config_import`	Import configuration from JSON	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`config_list`	List configuration values	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`config_reset`	Reset configuration to defaults	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`config_set`	Set configuration value	`v3/@claude-flow/cli/src/mcp-tools/config-tools.ts`
`coordination_consensus`	Manage consensus protocol with BFT, Raft, or Quorum strategies	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_load_balance`	Configure load balancing	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_metrics`	Get coordination metrics	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_node`	Manage coordination nodes	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_orchestrate`	Orchestrate multi-agent coordination	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_sync`	Synchronize state across nodes	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordination_topology`	Configure swarm topology	`v3/@claude-flow/cli/src/mcp-tools/coordination-tools.ts`
`coordinator`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`daa_agent_adapt`	Trigger agent adaptation based on feedback	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_agent_create`	Create a decentralized autonomous agent	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_cognitive_pattern`	Analyze or change cognitive patterns	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_knowledge_share`	Share knowledge between agents	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_learning_status`	Get learning status for DAA agents	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_performance_metrics`	Get DAA performance metrics	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_workflow_create`	Create an autonomous workflow	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`daa_workflow_execute`	Execute a DAA workflow	`v3/@claude-flow/cli/src/mcp-tools/daa-tools.ts`
`database`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`disk`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`embeddings_compare`	Compare similarity between two texts	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_generate`	Generate embeddings for text (Euclidean or hyperbolic)	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_hyperbolic`	Hyperbolic embedding operations (Poincaré ball)	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_init`	Initialize the ONNX embedding subsystem with hyperbolic support	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_neural`	Neural substrate operations (RuVector integration)	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_rabitq_build`	Build RaBitQ 1-bit quantized index from stored embeddings (32× compression). Pre-filters candidates via Hamming scan before exact rerank.	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_rabitq_search`	Search via RaBitQ quantized index (fast Hamming scan). Returns candidate IDs for reranking.	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_rabitq_status`	Get RaBitQ quantized index status — availability, vector count, compression ratio	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_search`	Semantic search across stored embeddings	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`embeddings_status`	Get embeddings system status and configuration	`v3/@claude-flow/cli/src/mcp-tools/embeddings-tools.ts`
`explain`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`github_issue_track`	Track and manage issues	`v3/@claude-flow/cli/src/mcp-tools/github-tools.ts`
`github_metrics`	Get repository metrics and statistics	`v3/@claude-flow/cli/src/mcp-tools/github-tools.ts`
`github_pr_manage`	Manage pull requests	`v3/@claude-flow/cli/src/mcp-tools/github-tools.ts`
`github_repo_analyze`	Analyze a GitHub repository	`v3/@claude-flow/cli/src/mcp-tools/github-tools.ts`
`github_workflow`	Manage GitHub Actions workflows	`v3/@claude-flow/cli/src/mcp-tools/github-tools.ts`
`guidance_capabilities`	List all capability areas with their tools, commands, agents, and skills. Use this to discover what Ruflo can do.	`v3/@claude-flow/cli/src/mcp-tools/guidance-tools.ts`
`guidance_discover`	Discover all available agents and skills from the .claude/ directory. Returns live filesystem data.	`v3/@claude-flow/cli/src/mcp-tools/guidance-tools.ts`
`guidance_quickref`	Quick reference card for common operations. Returns the most useful commands for a given domain.	`v3/@claude-flow/cli/src/mcp-tools/guidance-tools.ts`
`guidance_recommend`	Given a task description, recommend which capability areas, tools, agents, and workflow to use.	`v3/@claude-flow/cli/src/mcp-tools/guidance-tools.ts`
`guidance_workflow`	Get a recommended workflow template for a task type. Includes steps, agents, and topology.	`v3/@claude-flow/cli/src/mcp-tools/guidance-tools.ts`
`hive-mind_broadcast`	Broadcast message to all workers	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_consensus`	Propose or vote on consensus with BFT, Raft, or Quorum strategies	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_init`	Initialize the hive-mind collective	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_join`	Join an agent to the hive-mind	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_leave`	Remove an agent from the hive-mind	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_memory`	Access hive shared memory	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_shutdown`	Shutdown the hive-mind and terminate all workers	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_spawn`	Spawn workers and automatically join them to the hive-mind (combines agent/spawn + hive-mind/join)	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hive-mind_status`	Get hive-mind status	`v3/@claude-flow/cli/src/mcp-tools/hive-mind-tools.ts`
`hooks_build-agents`	Generate optimized agent configurations from pretrain data	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_explain`	Explain routing decision with full transparency	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_init`	Initialize hooks in project with .claude/settings.json	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence`	RuVector intelligence system status (shows REAL metrics from memory store)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_attention`	Compute attention-weighted similarity using MoE/Flash/Hyperbolic	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_learn`	Force immediate SONA learning cycle with EWC++ consolidation	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_pattern-search`	Search patterns using REAL vector search (HNSW when available, brute-force fallback)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_pattern-store`	Store pattern in ReasoningBank (HNSW-indexed)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_stats`	Get RuVector intelligence layer statistics	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_trajectory-end`	End trajectory and trigger SONA learning with EWC++	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_trajectory-start`	Begin SONA trajectory for reinforcement learning	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence_trajectory-step`	Record step in trajectory for reinforcement learning	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_intelligence-reset`	Reset intelligence learning state	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_list`	List all registered hooks	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_metrics`	View learning metrics dashboard	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_model-outcome`	Record model routing outcome for learning	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_model-route`	Route task to optimal Claude model (haiku/sonnet/opus) based on complexity	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_model-stats`	Get model routing statistics	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_notify`	Send cross-agent notification	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_post-command`	Record command execution outcome	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_post-edit`	Record editing outcome for learning	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_post-task`	Record task completion for learning	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_pre-command`	Assess risk before executing a command	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_pre-edit`	Get context and agent suggestions before editing a file	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_pre-task`	Record task start and get agent suggestions with intelligent model routing (ADR-026)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_pretrain`	Analyze repository to bootstrap intelligence (4-step pipeline)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_route`	Route task to optimal agent using semantic similarity (native HNSW or pure JS)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_session-end`	End current session, stop daemon, and persist state	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_session-restore`	Restore a previous session	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_session-start`	Initialize a new session and auto-start daemon	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_transfer`	Transfer learned patterns from another project	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_worker-cancel`	Cancel a running worker	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_worker-detect`	Detect worker triggers from user prompt (for UserPromptSubmit hook)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_worker-dispatch`	Dispatch a background worker for analysis/optimization tasks	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_worker-list`	List all 12 background workers with status and capabilities	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`hooks_worker-status`	Get status of a specific worker or all active workers	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`init`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_attention`	Record task start and get agent suggestions with intelligent model routing (ADR-026)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_learn`	Record task start and get agent suggestions with intelligent model routing (ADR-026)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_pattern-search`	Record task start and get agent suggestions with intelligent model routing (ADR-026)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_pattern-store`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_stats`	Record task start and get agent suggestions with intelligent model routing (ADR-026)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_trajectory-end`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_trajectory-start`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`intelligence_trajectory-step`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`mcp`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`mcp_status`	Get MCP server status, including stdio mode detection	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`memory`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`memory_bridge_status`	Show Claude Code memory bridge status — AgentDB vectors, SONA learning, intelligence patterns, and connection health.	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_delete`	Delete a memory entry by key	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_import_claude`	Import Claude Code auto-memory files into AgentDB with ONNX vector embeddings. Reads ~/.claude/projects//memory/.md files, parses YAML frontmatter, splits into sections, and stores with 384-dim embeddings for semantic search. Use allProjects=true to import from ALL Claude projects.	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_list`	List memory entries with optional filtering	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_migrate`	Manually trigger migration from legacy JSON store to sql.js	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_retrieve`	Retrieve a value from memory by key	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_search`	Semantic vector search using HNSW index (150x-12,500x faster than keyword search)	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_search_unified`	Search across both Claude Code memories and AgentDB entries using semantic vector similarity. Returns merged, deduplicated results from all namespaces.	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_stats`	Get memory storage statistics including HNSW index status	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`memory_store`	Store a value in memory with vector embedding for semantic search (sql.js + HNSW backend). Use upsert=true to update existing keys.	`v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts`
`metrics`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`network`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`neural`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`neural_compress`	Compress neural model or embeddings	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`neural_optimize`	Optimize neural model performance	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`neural_patterns`	Get or manage neural patterns	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`neural_predict`	Make predictions using a neural model	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`neural_status`	Get neural system status	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`neural_train`	Train a neural model	`v3/@claude-flow/cli/src/mcp-tools/neural-tools.ts`
`notify`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`performance_benchmark`	Run performance benchmarks	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`performance_bottleneck`	Detect performance bottlenecks	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`performance_metrics`	Get detailed performance metrics	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`performance_optimize`	Apply performance optimizations	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`performance_profile`	Profile specific component or operation	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`performance_report`	Generate performance report	`v3/@claude-flow/cli/src/mcp-tools/performance-tools.ts`
`persistence`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`post-command`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`post-edit`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`post-task`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`pre-command`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`pre-edit`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`pre-task`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`pretrain`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`progress_check`	Get current V3 implementation progress percentage and metrics	`v3/@claude-flow/cli/src/mcp-tools/progress-tools.ts`
`progress_summary`	Get human-readable V3 implementation progress summary	`v3/@claude-flow/cli/src/mcp-tools/progress-tools.ts`
`progress_sync`	Calculate and persist V3 progress metrics to file	`v3/@claude-flow/cli/src/mcp-tools/progress-tools.ts`
`progress_watch`	Get current watch status for progress monitoring	`v3/@claude-flow/cli/src/mcp-tools/progress-tools.ts`
`route`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`ruvllm_chat_format`	Format chat messages using a template (llama3, mistral, chatml, phi, gemma, or auto-detect).	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_generate_config`	Create a generation config (maxTokens, temperature, topP, etc.) as JSON.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_hnsw_add`	Add a pattern to an HNSW router. Embedding must match router dimensions.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_hnsw_create`	Create a WASM HNSW router for semantic pattern routing. Max ~11 patterns (v2.0.1 limit).	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_hnsw_route`	Route a query embedding to nearest patterns in HNSW index.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_microlora_adapt`	Adapt MicroLoRA weights with quality feedback.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_microlora_create`	Create a MicroLoRA adapter (ultra-lightweight LoRA, ranks 1-4).	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_sona_adapt`	Run SONA instant adaptation with a quality signal.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_sona_create`	Create a SONA instant adaptation loop (<1ms adaptation cycles).	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`ruvllm_status`	Get ruvllm-wasm availability and initialization status.	`v3/@claude-flow/cli/src/mcp-tools/ruvllm-tools.ts`
`session_delete`	Delete a saved session	`v3/@claude-flow/cli/src/mcp-tools/session-tools.ts`
`session_info`	Get detailed session information	`v3/@claude-flow/cli/src/mcp-tools/session-tools.ts`
`session_list`	List saved sessions	`v3/@claude-flow/cli/src/mcp-tools/session-tools.ts`
`session_restore`	Restore a saved session	`v3/@claude-flow/cli/src/mcp-tools/session-tools.ts`
`session_save`	Save current session state	`v3/@claude-flow/cli/src/mcp-tools/session-tools.ts`
`session-end`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`session-restore`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`session-start`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`swarm`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`swarm_exists`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`swarm_health`	Check swarm health status with real state inspection	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`swarm_init`	Initialize a swarm with persistent state tracking	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`swarm_shutdown`	Shutdown a swarm and update persistent state	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`swarm_status`	Get swarm status from persistent state	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`system_health`	Perform system health check	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`system_info`	Get system information	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`system_metrics`	Get system metrics and performance data	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`system_reset`	Reset system state	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`system_status`	Get overall system status	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`task_assign`	Assign a task to one or more agents	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_cancel`	Cancel a task	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_complete`	Mark task as complete	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_create`	Create a new task	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_list`	List all tasks	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_status`	Get task status	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`task_summary`	Get a summary of all tasks by status	`v3/@claude-flow/cli/src/mcp-tools/system-tools.ts`
`task_update`	Update task status or progress	`v3/@claude-flow/cli/src/mcp-tools/task-tools.ts`
`terminal_close`	Close a terminal session	`v3/@claude-flow/cli/src/mcp-tools/terminal-tools.ts`
`terminal_create`	Create a new terminal session	`v3/@claude-flow/cli/src/mcp-tools/terminal-tools.ts`
`terminal_execute`	Execute a command in a terminal session	`v3/@claude-flow/cli/src/mcp-tools/terminal-tools.ts`
`terminal_history`	Get command history for a terminal session	`v3/@claude-flow/cli/src/mcp-tools/terminal-tools.ts`
`terminal_list`	List all terminal sessions	`v3/@claude-flow/cli/src/mcp-tools/terminal-tools.ts`
`topology`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/swarm-tools.ts`
`transfer`	(no description)	`v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts`
`transfer_detect-pii`	Detect PII in content without redacting	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_ipfs-resolve`	Resolve IPNS name to CID	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_plugin-featured`	Get featured plugins from the store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_plugin-info`	Get detailed info about a plugin	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_plugin-official`	Get official plugins from the store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_plugin-search`	Search the plugin store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_store-download`	Download a pattern from the store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_store-featured`	Get featured patterns from the store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_store-info`	Get detailed info about a pattern	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_store-search`	Search the pattern store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`transfer_store-trending`	Get trending patterns from the store	`v3/@claude-flow/cli/src/mcp-tools/transfer-tools.ts`
`wasm_agent_create`	Create a sandboxed WASM agent with virtual filesystem (no OS access). Optionally use a gallery template.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_export`	Export a WASM agent\	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_files`	Get a WASM agent\	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_list`	List all active WASM agents.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_prompt`	Send a prompt to a WASM agent and get a response.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_terminate`	Terminate a WASM agent and free resources.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_agent_tool`	Execute a tool on a WASM agent sandbox. Tools: read_file, write_file, edit_file, write_todos, list_files. Use flat format: {tool, path, content, ...}.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_gallery_create`	Create a WASM agent from a gallery template.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_gallery_list`	List all available WASM agent gallery templates (Coder, Researcher, Tester, Reviewer, Security, Swarm).	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`wasm_gallery_search`	Search WASM agent gallery templates by query.	`v3/@claude-flow/cli/src/mcp-tools/wasm-agent-tools.ts`
`workflow_cancel`	Cancel a workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_create`	Create a new workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_delete`	Delete a workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_execute`	Execute a workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_list`	List all workflows	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_pause`	Pause a running workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_resume`	Resume a paused workflow	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_run`	Run a workflow from a template or file	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_status`	Get workflow status	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`
`workflow_template`	Save workflow as template or create from template	`v3/@claude-flow/cli/src/mcp-tools/workflow-tools.ts`

CLI commands (49)

Top-level command surface. Subcommands are documented per-command in the source file and in .claude-flow/CAPABILITIES.md after ruflo init.

Command	Description	Source
`ruflo agent`	Agent management commands	`v3/@claude-flow/cli/src/commands/agent.ts`
`ruflo analyze`	Code analysis, diff classification, graph boundaries, and change risk assessment	`v3/@claude-flow/cli/src/commands/analyze.ts`
`ruflo appliance`	Self-contained RVFA appliance management (build, inspect, verify, extract, run)	`v3/@claude-flow/cli/src/commands/appliance.ts`
`ruflo autopilot`	Persistent swarm completion — keeps agents working until ALL tasks are done	`v3/@claude-flow/cli/src/commands/autopilot.ts`
`ruflo benchmark`	Performance benchmarking for self-learning and neural systems	`v3/@claude-flow/cli/src/commands/benchmark.ts`
`ruflo claims`	Claims-based authorization, permissions, and access control	`v3/@claude-flow/cli/src/commands/claims.ts`
`ruflo cleanup`	Remove project artifacts created by claude-flow/ruflo	`v3/@claude-flow/cli/src/commands/cleanup.ts`
`ruflo completions`	Generate shell completion scripts	`v3/@claude-flow/cli/src/commands/completions.ts`
`ruflo config`	Configuration management	`v3/@claude-flow/cli/src/commands/config.ts`
`ruflo daemon`	Manage background worker daemon (Node.js-based, auto-runs like shell helpers)	`v3/@claude-flow/cli/src/commands/daemon.ts`
`ruflo deployment`	Deployment management, environments, rollbacks	`v3/@claude-flow/cli/src/commands/deployment.ts`
`ruflo doctor`	System diagnostics and health checks	`v3/@claude-flow/cli/src/commands/doctor.ts`
`ruflo download`	Download a pattern from the registry	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo embeddings`	Vector embeddings, semantic search, similarity operations	`v3/@claude-flow/cli/src/commands/embeddings.ts`
`ruflo guidance`	Guidance Control Plane - compile, retrieve, enforce, and optimize guidance rules	`v3/@claude-flow/cli/src/commands/guidance.ts`
`ruflo hive-mind`	Queen-led consensus-based multi-agent coordination	`v3/@claude-flow/cli/src/commands/hive-mind.ts`
`ruflo hooks`	Self-learning hooks system for intelligent workflow automation	`v3/@claude-flow/cli/src/commands/hooks.ts`
`ruflo info`	Show detailed information about a pattern	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo init`	Initialize RuFlo in the current directory	`v3/@claude-flow/cli/src/commands/init.ts`
`ruflo issues`	Collaborative issue claims for human-agent workflows (ADR-016)	`v3/@claude-flow/cli/src/commands/issues.ts`
`ruflo list`	List patterns from decentralized registry	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo mcp`	MCP server management	`v3/@claude-flow/cli/src/commands/mcp.ts`
`ruflo memory`	Memory management commands	`v3/@claude-flow/cli/src/commands/memory.ts`
`ruflo migrate`	V2 to V3 migration tools	`v3/@claude-flow/cli/src/commands/migrate.ts`
`ruflo neural`	Neural pattern training, MoE, Flash Attention, pattern learning	`v3/@claude-flow/cli/src/commands/neural.ts`
`ruflo performance`	Performance profiling, benchmarking, optimization, metrics	`v3/@claude-flow/cli/src/commands/performance.ts`
`ruflo plugins`	Plugin management with IPFS-based decentralized registry	`v3/@claude-flow/cli/src/commands/plugins.ts`
`ruflo process`	Background process management, daemon, and monitoring	`v3/@claude-flow/cli/src/commands/process.ts`
`ruflo progress`	Check V3 implementation progress	`v3/@claude-flow/cli/src/commands/progress.ts`
`ruflo providers`	Manage AI providers, models, and configurations	`v3/@claude-flow/cli/src/commands/providers.ts`
`ruflo publish`	Publish an RVFA appliance to IPFS via Pinata	`v3/@claude-flow/cli/src/commands/appliance-advanced.ts`
`ruflo publish`	Publish a pattern to the decentralized registry	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo route`	Intelligent task-to-agent routing using Q-Learning	`v3/@claude-flow/cli/src/commands/route.ts`
`ruflo search`	Search patterns in the decentralized registry	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo security`	Security scanning, CVE detection, threat modeling, AI defense	`v3/@claude-flow/cli/src/commands/security.ts`
`ruflo session`	Session management commands	`v3/@claude-flow/cli/src/commands/session.ts`
`ruflo sign`	Sign an RVFA appliance with Ed25519 for tamper detection	`v3/@claude-flow/cli/src/commands/appliance-advanced.ts`
`ruflo start`	Start the RuFlo orchestration system	`v3/@claude-flow/cli/src/commands/start.ts`
`ruflo status`	Show system status	`v3/@claude-flow/cli/src/commands/status.ts`
`ruflo store`	Pattern marketplace - list, search, download, publish	`v3/@claude-flow/cli/src/commands/transfer-store.ts`
`ruflo swarm`	Swarm coordination commands	`v3/@claude-flow/cli/src/commands/swarm.ts`
`ruflo task`	Task management commands	`v3/@claude-flow/cli/src/commands/task.ts`
`ruflo update`	Hot-patch a section in an RVFA appliance	`v3/@claude-flow/cli/src/commands/appliance-advanced.ts`
`ruflo verify`	Verify installed artifact against the signed witness manifest	`v3/@claude-flow/cli/src/commands/verify.ts`
`ruflo wasm-create`	Create a WASM-sandboxed agent	`v3/@claude-flow/cli/src/commands/agent-wasm.ts`
`ruflo wasm-gallery`	List available WASM agent gallery templates	`v3/@claude-flow/cli/src/commands/agent-wasm.ts`
`ruflo wasm-prompt`	Send a prompt to a WASM agent	`v3/@claude-flow/cli/src/commands/agent-wasm.ts`
`ruflo wasm-status`	Check rvagent-wasm availability, version, and capabilities	`v3/@claude-flow/cli/src/commands/agent-wasm.ts`
`ruflo workflow`	Workflow execution and management	`v3/@claude-flow/cli/src/commands/workflow.ts`

Plugins (32)

Plugin	Version	Description
`ruflo-adr`	0.1.0	ADR lifecycle management — create, index, supersede, and link Architecture Decision Records to code
`ruflo-agentdb`	0.1.0	AgentDB memory controllers with HNSW vector search, RuVector embeddings, and causal knowledge graphs
`ruflo-aidefence`	0.1.0	AI safety scanning, PII detection, prompt injection defense, and adaptive threat learning
`ruflo-autopilot`	0.1.0	Autonomous /loop-driven task completion with learning, prediction, and progress tracking
`ruflo-browser`	0.1.0	Agentic browser automation with Playwright for testing, scraping, and UI interaction
`ruflo-core`	0.1.0	Core Ruflo MCP tools, commands, and Claude Code orchestration patterns
`ruflo-cost-tracker`	0.1.0	Token usage tracking, model cost attribution per agent, budget alerts, and optimization recommendations
`ruflo-daa`	0.1.0	Dynamic Agentic Architecture with cognitive patterns, knowledge sharing, and adaptive agents
`ruflo-ddd`	0.1.0	Domain-Driven Design scaffolding — bounded contexts, aggregate roots, domain events, and anti-corruption layers
`ruflo-docs`	0.1.0	Documentation generation, API docs, and drift detection
`ruflo-federation`	0.2.0	Cross-installation agent federation with zero-trust security, peer discovery, consensus-based task routing, and per-call budget circuit breaker (ADR-097)
`ruflo-goals`	0.1.0	Long-horizon goal planning, deep research orchestration, and adaptive replanning using GOAP algorithms
`ruflo-intelligence`	0.1.0	Self-learning neural intelligence with SONA patterns, trajectory learning, and intelligent model routing
`ruflo-iot-cognitum`	0.1.0	IoT device lifecycle, telemetry anomaly detection, fleet management, and witness chain verification for Cognitum Seed hardware
`ruflo-jujutsu`	0.1.0	Advanced git workflows with diff analysis, risk scoring, and reviewer recommendations
`ruflo-knowledge-graph`	0.1.0	Knowledge graph construction — entity extraction, relation mapping, and pathfinder graph traversal
`ruflo-loop-workers`	0.1.0	Cache-aware /loop workers and CronCreate background automation
`ruflo-market-data`	0.1.0	Market data ingestion — feed normalization, OHLCV vectorization, and HNSW-indexed pattern matching
`ruflo-migrations`	0.1.0	Schema migration management — generate, validate, dry-run, and rollback database migrations
`ruflo-neural-trader`	0.2.0	Neural trading via npx neural-trader — self-learning strategies, Rust/NAPI backtesting, 112+ MCP tools, swarm coordination, and portfolio optimization
`ruflo-observability`	0.1.0	Structured logging, distributed tracing, and metrics — correlate agent swarm activity with application telemetry
`ruflo-plugin-creator`	0.1.0	Scaffold, validate, and publish new Claude Code plugins with proper structure and MCP tool wiring
`ruflo-rag-memory`	0.1.0	RuVector memory with HNSW search, AgentDB, and semantic retrieval
`ruflo-ruvector`	0.2.0	Self-learning vector database via npx ruvector — HNSW, FlashAttention-3, Graph RAG, hybrid search, DiskANN, 103 MCP tools, Brain AGI
`ruflo-ruvllm`	0.1.0	RuVLLM local inference with chat formatting, model configuration, and MicroLoRA fine-tuning
`ruflo-rvf`	0.1.0	RVF format for portable agent memory, session persistence, and cross-platform transfer
`ruflo-security-audit`	0.1.0	Security review, dependency scanning, policy gates, and CVE monitoring
`ruflo-sparc`	0.1.0	SPARC methodology — Specification, Pseudocode, Architecture, Refinement, Completion phases with gate checks
`ruflo-swarm`	0.1.0	Agent teams, swarm coordination, Monitor streams, and worktree isolation
`ruflo-testgen`	0.1.0	Test gap detection, coverage analysis, and automated test generation
`ruflo-wasm`	0.1.0	Sandboxed WASM agent creation, execution, and gallery sharing
`ruflo-workflows`	0.1.0	Visual workflow automation with templates, orchestration, and lifecycle management

Agents (43)

Agent	Plugin	Description
`adr-architect`	ruflo-adr	ADR lifecycle manager -- create, index, supersede, and link Architecture Decision Records to code
`agentdb-specialist`	ruflo-agentdb	AgentDB and RuVector specialist for memory operations, HNSW indexing, and semantic search
`architect`	ruflo-swarm	System architect for designing implementation approaches, API contracts, and module boundaries
`autopilot-coordinator`	ruflo-autopilot	Autonomous task completion coordinator using /loop and autopilot MCP tools
`backtest-engineer`	ruflo-neural-trader	Backtesting specialist using npx neural-trader Rust/NAPI engine — walk-forward validation, Monte Carlo simulation, parameter optimization
`browser-agent`	ruflo-browser	Browser automation agent for UI testing, web scraping, and interactive page validation
`coder`	ruflo-core	Implementation specialist for writing clean, efficient code following project patterns
`coordinator`	ruflo-swarm	Swarm coordinator that manages agent lifecycle, task assignment, and anti-drift enforcement
`cost-analyst`	ruflo-cost-tracker	Tracks token usage per agent and model, computes cost attribution in USD, monitors budgets, and recommends optimizations
`daa-specialist`	ruflo-daa	Dynamic Agentic Architecture specialist for adaptive agents, cognitive patterns, and knowledge sharing
`data-engineer`	ruflo-market-data	Ingests market data feeds, normalizes OHLCV vectors, and performs HNSW-indexed candlestick pattern matching
`deep-researcher`	ruflo-goals	Multi-source research specialist that gathers, cross-references, and synthesizes information with evidence grading and contradiction resolution
`device-coordinator`	ruflo-iot-cognitum	Manages Cognitum Seed device fleet as Ruflo agent swarm members with 5-tier trust scoring
`docs-writer`	ruflo-docs	Documentation specialist -- generates and maintains project documentation
`domain-modeler`	ruflo-ddd	Domain-Driven Design specialist -- maps domains to bounded contexts, designs aggregate roots, defines domain events, and generates anti-corruption layers
`federation-coordinator`	ruflo-federation	Orchestrates cross-installation agent federation with zero-trust security
`fleet-manager`	ruflo-iot-cognitum	Manages device fleets, firmware rollouts, and fleet-wide policies
`git-specialist`	ruflo-jujutsu	Git workflow specialist for diff analysis, risk assessment, and PR management
`goal-planner`	ruflo-goals	GOAP specialist that creates optimal action plans using A* search through state spaces, with adaptive replanning, trajectory learning, and multi-mode execution
`graph-navigator`	ruflo-knowledge-graph	Extracts entities and relations from code and docs, builds knowledge graphs, and traverses them with pathfinder scoring
`horizon-tracker`	ruflo-goals	Long-horizon objective tracker that persists progress across sessions with milestone checkpoints, drift detection, and adaptive timeline management
`intelligence-specialist`	ruflo-intelligence	Self-learning intelligence specialist focused on neural training, pattern discovery, and routing optimization
`llm-specialist`	ruflo-ruvllm	RuVLLM specialist for local inference configuration, MicroLoRA fine-tuning, and multi-provider routing
`loop-worker-coordinator`	ruflo-loop-workers	Coordinates background worker scheduling, health monitoring, and dispatch across loop and cron execution modes
`market-analyst`	ruflo-neural-trader	Market regime detection and technical analysis using npx neural-trader — RSI, MACD, Bollinger Bands, volume profile, regime classification
`memory-specialist`	ruflo-rag-memory	SOTA RAG memory specialist — hybrid search (sparse+dense), Graph RAG multi-hop retrieval, MMR diversity reranking, smart consolidation, ruvector integration
`migration-engineer`	ruflo-migrations	Generates sequential database migrations with up/down pairs, dry-run validation, and rollback safety checks
`observability-engineer`	ruflo-observability	Implements structured logging, distributed tracing, and metrics collection to correlate agent swarm activity with application telemetry
`plugin-developer`	ruflo-plugin-creator	Plugin development specialist for scaffolding, validating, and publishing Claude Code plugins
`researcher`	ruflo-core	Pathfinder research specialist — traverses RuVector memory graphs and codebase to surface patterns, dependencies, and prior art
`reviewer`	ruflo-core	Code review specialist for quality, security, and best-practice enforcement
`risk-analyst`	ruflo-neural-trader	Portfolio risk assessment and position sizing using npx neural-trader — VaR/CVaR, Kelly criterion, circuit breakers, correlation monitoring
`safety-specialist`	ruflo-aidefence	AI safety specialist for threat detection, PII scanning, and adaptive defense training
`security-auditor`	ruflo-security-audit	Specialized agent for security auditing and vulnerability remediation
`session-specialist`	ruflo-rvf	Session persistence specialist for state management, memory transfer, and cross-conversation continuity
`sparc-orchestrator`	ruflo-sparc	Orchestrates the 5-phase SPARC methodology (Specification, Pseudocode, Architecture, Refinement, Completion) with quality gates between each phase, spawning specialized agents per phase
`telemetry-analyzer`	ruflo-iot-cognitum	Analyzes Cognitum Seed device telemetry for anomalies using Z-score detection
`tester`	ruflo-testgen	Specialized testing agent -- writes comprehensive tests using TDD London School
`trading-strategist`	ruflo-neural-trader	Designs and optimizes neural trading strategies using npx neural-trader — LSTM/Transformer models, Rust/NAPI backtesting, Z-score anomaly detection
`vector-engineer`	ruflo-ruvector	Vector operations specialist using npx ruvector — HNSW indexing, FlashAttention-3, Graph RAG, hybrid search, DiskANN, Brain AGI, 103 MCP tools
`wasm-specialist`	ruflo-wasm	WASM sandbox specialist for creating, managing, and sharing isolated agent environments
`witness-auditor`	ruflo-iot-cognitum	Verifies Ed25519 witness chain integrity and detects provenance gaps
`workflow-specialist`	ruflo-workflows	Workflow automation specialist for creating, executing, and managing multi-step processes