Back to Numpy

Glossary

doc/source/glossary.rst

2.5.0.dev018.3 KB
Original Source

Glossary


.. glossary::

(n,) A parenthesized number followed by a comma denotes a tuple with one element. The trailing comma distinguishes a one-element tuple from a parenthesized n.

-1 - In a dimension entry, instructs NumPy to choose the length that will keep the total number of array elements the same.

       >>> np.arange(12).reshape(4, -1).shape
       (4, 3)

   - **In an index**, any negative value
     `denotes <https://docs.python.org/dev/faq/programming.html#what-s-a-negative-index>`_
     indexing from the right.

. . . An :py:data:Ellipsis.

   - **When indexing an array**, shorthand that the missing axes, if they
     exist, are full slices.

       >>> a = np.arange(24).reshape(2,3,4)

       >>> a[...].shape
       (2, 3, 4)

       >>> a[...,0].shape
       (2, 3)

       >>> a[0,...].shape
       (3, 4)

       >>> a[0,...,0].shape
       (3,)

     It can be used at most once; ``a[...,0,...]`` raises an :exc:`IndexError`.

   - **In printouts**, NumPy substitutes ``...`` for the middle elements of
     large arrays. To see the entire array, use `numpy.printoptions`

: The Python :term:python:slice operator. In ndarrays, slicing can be applied to every axis:

       >>> a = np.arange(24).reshape(2,3,4)
       >>> a
       array([[[ 0,  1,  2,  3],
               [ 4,  5,  6,  7],
               [ 8,  9, 10, 11]],
       <BLANKLINE>
              [[12, 13, 14, 15],
               [16, 17, 18, 19],
               [20, 21, 22, 23]]])
       <BLANKLINE>
       >>> a[1:,-2:,:-1]
       array([[[16, 17, 18],
               [20, 21, 22]]])

   Trailing slices can be omitted: ::

       >>> a[1] == a[1,:,:]
       array([[ True,  True,  True,  True],
              [ True,  True,  True,  True],
              [ True,  True,  True,  True]])

   In contrast to Python, where slicing creates a copy, in NumPy slicing
   creates a :term:`view`.

   For details, see :ref:`combining-advanced-and-basic-indexing`.

< In a dtype declaration, indicates that the data is :term:little-endian (the bracket is big on the right). ::

       >>> dt = np.dtype('<f')  # little-endian single-precision float
   In a dtype declaration, indicates that the data is
   :term:`big-endian` (the bracket is big on the left). ::

       >>> dt = np.dtype('>H')  # big-endian unsigned short

advanced indexing Rather than using a :doc:scalar <reference/arrays.scalars> or slice as an index, an axis can be indexed with an array, providing fine-grained selection. This is known as :ref:advanced indexing<advanced-indexing> or "fancy indexing".

along an axis An operation along axis n of array a behaves as if its argument were an array of slices of a where each slice has a successive index of axis n.

   For example, if ``a`` is a 3 x `N` array, an operation along axis 0
   behaves as if its argument were an array containing slices of each row:

       >>> np.array((a[0,:], a[1,:], a[2,:])) #doctest: +SKIP

   To make it concrete, we can pick the operation to be the array-reversal
   function :func:`numpy.flip`, which accepts an ``axis`` argument. We
   construct a 3 x 4 array ``a``:

       >>> a = np.arange(12).reshape(3,4)
       >>> a
       array([[ 0,  1,  2,  3],
              [ 4,  5,  6,  7],
              [ 8,  9, 10, 11]])

   Reversing along axis 0 (the row axis) yields

       >>> np.flip(a,axis=0)
       array([[ 8,  9, 10, 11],
              [ 4,  5,  6,  7],
              [ 0,  1,  2,  3]])

   Recalling the definition of `along an axis`,  ``flip`` along axis 0 is
   treating its argument as if it were

       >>> np.array((a[0,:], a[1,:], a[2,:]))
       array([[ 0,  1,  2,  3],
              [ 4,  5,  6,  7],
              [ 8,  9, 10, 11]])

   and the result of ``np.flip(a,axis=0)`` is to reverse the slices:

       >>> np.array((a[2,:],a[1,:],a[0,:]))
       array([[ 8,  9, 10, 11],
              [ 4,  5,  6,  7],
              [ 0,  1,  2,  3]])

array Used synonymously in the NumPy docs with :term:ndarray.

array_like Any :doc:scalar <reference/arrays.scalars> or :term:python:sequence that can be interpreted as an ndarray. In addition to ndarrays and scalars this category includes lists (possibly nested and with different element types) and tuples. Any argument accepted by :doc:numpy.array <reference/generated/numpy.array> is array_like. ::

       >>> a = np.array([[1, 2.0], [0, 0], (1+1j, 3.)])

       >>> a
       array([[1.+0.j, 2.+0.j],
              [0.+0.j, 0.+0.j],
              [1.+1.j, 3.+0.j]])

array scalar An :doc:array scalar <reference/arrays.scalars> is an instance of the types/classes float32, float64, etc.. For uniformity in handling operands, NumPy treats a scalar as an array of zero dimension. In contrast, a 0-dimensional array is an :doc:ndarray <reference/arrays.ndarray> instance containing precisely one value.

axis Another term for an array dimension. Axes are numbered left to right; axis 0 is the first element in the shape tuple.

   In a two-dimensional vector, the elements of axis 0 are rows and the
   elements of axis 1 are columns.

   In higher dimensions, the picture changes. NumPy prints
   higher-dimensional vectors as replications of row-by-column building
   blocks, as in this three-dimensional vector:

       >>> a = np.arange(12).reshape(2,2,3)
       >>> a
       array([[[ 0,  1,  2],
               [ 3,  4,  5]],
              [[ 6,  7,  8],
               [ 9, 10, 11]]])

   ``a`` is depicted as a two-element array whose elements are 2x3 vectors.
   From this point of view, rows and columns are the final two axes,
   respectively, in any shape.

   This rule helps you anticipate how a vector will be printed, and
   conversely how to find the index of any of the printed elements. For
   instance, in the example, the last two values of 8's index must be 0 and
   2. Since 8 appears in the second of the two 2x3's, the first index must
   be 1:

       >>> a[1,0,2]
       8

   A convenient way to count dimensions in a printed vector is to
   count ``[`` symbols after the open-parenthesis. This is
   useful in distinguishing, say, a (1,2,3) shape from a (2,3) shape:

       >>> a = np.arange(6).reshape(2,3)
       >>> a.ndim
       2
       >>> a
       array([[0, 1, 2],
              [3, 4, 5]])

       >>> a = np.arange(6).reshape(1,2,3)
       >>> a.ndim
       3
       >>> a
       array([[[0, 1, 2],
               [3, 4, 5]]])

.base

   If an array does not own its memory, then its
   :doc:`base <reference/generated/numpy.ndarray.base>` attribute returns
   the object whose memory the array is referencing. That object may be
   referencing the memory from still another object, so the owning object
   may be ``a.base.base.base...``. Some writers erroneously claim that
   testing ``base`` determines if arrays are :term:`view`\ s. For the
   correct way, see :func:`numpy.shares_memory`.

big-endian See Endianness <https://en.wikipedia.org/wiki/Endianness>_.

BLAS Basic Linear Algebra Subprograms <https://en.wikipedia.org/wiki/Basic_Linear_Algebra_Subprograms>_

broadcast broadcasting is NumPy's ability to process ndarrays of different sizes as if all were the same size.

   It permits an elegant do-what-I-mean behavior where, for instance,
   adding a scalar to a vector adds the scalar value to every element.

       >>> a = np.arange(3)
       >>> a
       array([0, 1, 2])

       >>> a + [3, 3, 3]
       array([3, 4, 5])

       >>> a + 3
       array([3, 4, 5])

   Ordinarily, vector operands must all be the same size, because NumPy
   works element by element -- for instance, ``c = a * b`` is ::

       c[0,0,0] = a[0,0,0] * b[0,0,0]
       c[0,0,1] = a[0,0,1] * b[0,0,1]
      ...

   But in certain useful cases, NumPy can duplicate data along "missing"
   axes or "too-short" dimensions so shapes will match. The duplication
   costs no memory or time. For details, see
   :doc:`Broadcasting. <user/basics.broadcasting>`

C order Same as :term:row-major.

casting The process of converting array data from one dtype to another. There exist several casting modes, defined by the following casting rules:

   - ``no``: The data types should not be cast at all.
     Any mismatch in data types between the arrays will raise a
     `TypeError`.
   - ``equiv``: Only byte-order changes are allowed.
   - ``safe``: Only casts that can preserve values are allowed. Upcasting
     (e.g., from int to float) is allowed, but downcasting is not.
   - ``same_kind``: The 'same_kind' casting option allows safe casts and
     casts within a kind, like float64 to float32.
   - ``unsafe``: any data conversions may be done.

column-major See Row- and column-major order <https://en.wikipedia.org/wiki/Row-_and_column-major_order>_.

contiguous

   An array is contiguous if:

   - it occupies an unbroken block of memory, and
   - array elements with higher indexes occupy higher addresses (that
     is, no :term:`stride` is negative).

   There are two types of proper-contiguous NumPy arrays:

   - Fortran-contiguous arrays refer to data that is stored column-wise,
     i.e. the indexing of data as stored in memory starts from the
     lowest dimension;
   - C-contiguous, or simply contiguous arrays, refer to data that is
     stored row-wise, i.e. the indexing of data as stored in memory
     starts from the highest dimension.

   For one-dimensional arrays these notions coincide.

   For example, a 2x2 array ``A`` is Fortran-contiguous if its elements are
   stored in memory in the following order::

       A[0,0] A[1,0] A[0,1] A[1,1]

   and C-contiguous if the order is as follows::

       A[0,0] A[0,1] A[1,0] A[1,1]

   To test whether an array is C-contiguous, use the ``.flags.c_contiguous``
   attribute of NumPy arrays.  To test for Fortran contiguity, use the
   ``.flags.f_contiguous`` attribute.

copy See :term:view.

dimension See :term:axis.

dtype The datatype describing the (identically typed) elements in an ndarray. It can be changed to reinterpret the array contents. For details, see :doc:Data type objects (dtype). <reference/arrays.dtypes>

fancy indexing Another term for :term:advanced indexing.

field In a :term:structured data type, each subtype is called a field. The field has a name (a string), a type (any valid dtype), and an optional title. See :ref:arrays.dtypes.

Fortran order Same as :term:column-major.

flattened See :term:ravel.

homogeneous All elements of a homogeneous array have the same type. ndarrays, in contrast to Python lists, are homogeneous. The type can be complicated, as in a :term:structured array, but all elements have that type.

   NumPy `object arrays <#term-object-array>`_, which contain references to
   Python objects, fill the role of heterogeneous arrays.

itemsize The size of the dtype element in bytes.

little-endian See Endianness <https://en.wikipedia.org/wiki/Endianness>_.

mask A boolean array used to select only certain elements for an operation:

       >>> x = np.arange(5)
       >>> x
       array([0, 1, 2, 3, 4])

       >>> mask = (x > 2)
       >>> mask
       array([False, False, False, True,  True])

       >>> x[mask] = -1
       >>> x
       array([ 0,  1,  2,  -1, -1])

masked array Bad or missing data can be cleanly ignored by putting it in a masked array, which has an internal boolean array indicating invalid entries. Operations with masked arrays ignore these entries. ::

     >>> a = np.ma.masked_array([np.nan, 2, np.nan], [True, False, True])
     >>> a
     masked_array(data=[--, 2.0, --],
                  mask=[ True, False,  True],
            fill_value=1e+20)

     >>> a + [1, 2, 3]
     masked_array(data=[--, 4.0, --],
                  mask=[ True, False,  True],
            fill_value=1e+20)

   For details, see :doc:`Masked arrays. <reference/maskedarray>`

matrix NumPy's two-dimensional :doc:matrix class <reference/generated/numpy.matrix> should no longer be used; use regular ndarrays.

ndarray :doc:NumPy's basic structure <reference/arrays>.

object array An array whose dtype is object; that is, it contains references to Python objects. Indexing the array dereferences the Python objects, so unlike other ndarrays, an object array has the ability to hold heterogeneous objects.

ravel :doc:numpy.ravel \ <reference/generated/numpy.ravel> and :doc:numpy.flatten \ <reference/generated/numpy.ndarray.flatten> both flatten an ndarray. ravel will return a view if possible; flatten always returns a copy.

   Flattening collapses a multidimensional array to a single dimension;
   details of how this is done (for instance, whether ``a[n+1]`` should be
   the next row or next column) are parameters.

record array A :term:structured array with allowing access in an attribute style (a.field) in addition to a['field']. For details, see :doc:numpy.recarray. <reference/generated/numpy.recarray>

row-major See Row- and column-major order <https://en.wikipedia.org/wiki/Row-_and_column-major_order>_. NumPy creates arrays in row-major order by default.

scalar In NumPy, usually a synonym for :term:array scalar.

shape A tuple showing the length of each dimension of an ndarray. The length of the tuple itself is the number of dimensions (:doc:numpy.ndim <reference/generated/numpy.ndarray.ndim>). The product of the tuple elements is the number of elements in the array. For details, see :doc:numpy.ndarray.shape <reference/generated/numpy.ndarray.shape>.

stride Physical memory is one-dimensional; strides provide a mechanism to map a given index to an address in memory. For an N-dimensional array, its strides attribute is an N-element tuple; advancing from index i to index i+1 on axis n means adding a.strides[n] bytes to the address.

   Strides are computed automatically from an array's dtype and
   shape, but can be directly specified using
   :doc:`as_strided <reference/generated/numpy.lib.stride_tricks.as_strided>`.
   Bounds validation can be enabled with the ``check_bounds`` parameter.

   For details, see
   :doc:`numpy.ndarray.strides <reference/generated/numpy.ndarray.strides>`.

   To see how striding underlies the power of NumPy views, see
   `The NumPy array: a structure for efficient numerical computation. \
   <https://arxiv.org/pdf/1102.1523.pdf>`_

structured array Array whose :term:dtype is a :term:structured data type.

structured data type Users can create arbitrarily complex :term:dtypes <dtype> that can include other arrays and dtypes. These composite dtypes are called :doc:structured data types. <user/basics.rec>

subarray An array nested in a :term:structured data type, as b is here:

    >>> dt = np.dtype([('a', np.int32), ('b', np.float32, (3,))])
    >>> np.zeros(3, dtype=dt)
    array([(0, [0., 0., 0.]), (0, [0., 0., 0.]), (0, [0., 0., 0.])],
          dtype=[('a', '<i4'), ('b', '<f4', (3,))])

subarray data type An element of a structured datatype that behaves like an ndarray.

title An alias for a field name in a structured datatype.

type In NumPy, usually a synonym for :term:dtype. For the more general Python meaning, :term:see here. <python:type>

ufunc NumPy's fast element-by-element computation (:term:vectorization) gives a choice which function gets applied. The general term for the function is ufunc, short for universal function. NumPy routines have built-in ufuncs, but users can also :doc:write their own. <reference/ufuncs>

vectorization NumPy hands off array processing to C, where looping and computation are much faster than in Python. To exploit this, programmers using NumPy eliminate Python loops in favor of array-to-array operations. :term:vectorization can refer both to the C offloading and to structuring NumPy code to leverage it.

view Without touching underlying data, NumPy can make one array appear to change its datatype and shape.

   An array created this way is a `view`, and NumPy often exploits the
   performance gain of using a view versus making a new array.

   A potential drawback is that writing to a view can alter the original
   as well. If this is a problem, NumPy instead needs to create a
   physically distinct array -- a `copy`.

   Some NumPy routines always return views, some always return copies, some
   may return one or the other, and for some the choice can be specified.
   Responsibility for managing views and copies falls to the programmer.
   :func:`numpy.shares_memory` will check whether ``b`` is a view of
   ``a``, but an exact answer isn't always feasible, as the documentation
   page explains.

     >>> x = np.arange(5)
     >>> x
     array([0, 1, 2, 3, 4])

     >>> y = x[::2]
     >>> y
     array([0, 2, 4])

     >>> x[0] = 3 # changing x changes y as well, since y is a view on x
     >>> y
     array([3, 2, 4])