Protein Data Bank (PDB) publication Loader

bash

pip install llama-index-readers-pdb

This loader fetches the abstract of PDB entries using the RCSB (Research Collaboratory for Structural Bioinformatics) or EBI (European Bioinformatics Institute) REST api.

Usage

To use this loader, simply pass an array of PDB ids into load_data:

python

from llama_index.readers.pdb import PdbAbstractReader

loader = PdbAbstractReader()
documents = loader.load_data(pdb_id=["1cbs"])

This loader is designed to be used as a way to load data into LlamaIndex.