Description

The script is used to convert some kinds of DICOM data to regular images. Then you can annotate these images on CVAT and get a segmentation mask. The conversion script was tested on CT, MT and some multi-frame DICOM data. DICOM files with series (multi-frame) are saved under the same name with a number postfix: 001, 002, 003, etc.

Installation

bash

python3 -m venv .env
. .env/bin/activate
pip install -r requirements.txt

Running

. .env/bin/activate # if not activated
python script.py input_data output_data