FastFold Inference

Table of contents

• FastFold Inference
  • Table of contents
  • 📚 Overview
  • 🚀 Quick Start
  • 🔍 Dive into FastFold

📚 Overview

This example lets you to try out the inference of FastFold.

🚀 Quick Start

1. Install FastFold

We highly recommend you to install FastFold with conda.

git clone https://github.com/hpcaitech/FastFold
cd FastFold
conda env create --name=fastfold -f environment.yml
conda activate fastfold
python setup.py install

2. Download datasets.

It may take ~900GB space to keep datasets.

./scripts/download_all_data.sh data/

3. Run the inference scripts.

bash inference.sh

You can find predictions under the outputs dir.

🔍 Dive into FastFold

There are another features of FastFold, such as:

• more excellent kernel based on triton
• much faster data processing based on ray
• training supported

More detailed information can be seen here.