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Preregistration scaffold: {{PROJECT_ID}}

skills/hypothesis-generation/assets/preregistration_scaffold_template.md

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Preregistration scaffold: {{PROJECT_ID}}

UNREGISTERED DRAFT — NOT AN APPROVAL OR SCIENTIFIC ENDORSEMENT

Generated locally on {{GENERATED_ON}} from a validated structural record. Complete repository-specific fields, obtain required human/ethics/safety/regulatory review, and verify every statement before registration.

1. Administrative record

  • Project ID: {{PROJECT_ID}}
  • Accountable human owner: {{HUMAN_OWNER}}
  • Record status: {{RECORD_STATUS}}
  • Record updated: {{UPDATED_ON}}
  • Registration repository and identifier: [TO COMPLETE]
  • Registration timestamp: [TO COMPLETE]
  • Study status and prior access to target data: [TO COMPLETE]
  • Roles, funding, conflicts, sponsor role: [TO COMPLETE]

2. Authorization and oversight gates

{{ETHICS_AND_FEASIBILITY}}

  • Human/animal/biosafety/dual-use/data/regulatory determinations and identifiers: [TO COMPLETE]
  • Local policy and jurisdiction checked on: [TO COMPLETE]
  • Unresolved work must not begin until the responsible authority clears it.

3. Search boundary and evidence

{{EVIDENCE_BOUNDARY}}

  • Attach the completed search-boundary record and evidence ledger.
  • “Not located within this boundary” does not establish universal absence or novelty.
  • Verify every citation and claim-to-source link against the primary source.

4. Frozen observation

{{OBSERVATION}}

  • Units, preprocessing, exclusions, missingness, and uncertainty: [TO COMPLETE]
  • Whether expected or selected after inspection: [TO COMPLETE]

5. Research question and claim type

{{RESEARCH_QUESTION}}

6. Candidate hypotheses and mechanisms

{{HYPOTHESES}}

All listed hypotheses remain candidates. This scaffold does not rank or select one.

7. Causal estimand(s), if applicable

{{ESTIMANDS}}

  • Target-trial/design analogue and identification logic: [TO COMPLETE]
  • Confounding, selection, collider, measurement, reverse-causation, positivity, and interference assumptions: [TO COMPLETE]

8. Predictions, rivals, and falsification

{{PREDICTIONS}}

  • Indeterminate and mixed-mechanism outcomes: [TO COMPLETE]
  • Assumption/manipulation checks required before interpreting a challenge: [TO COMPLETE]

9. Null hypotheses and controls

{{NULLS_AND_CONTROLS}}

  • Positive/procedural-control details: [TO COMPLETE]
  • Why each negative control cannot operate through the target mechanism and which bias pathways it shares: [TO COMPLETE]

10. Operationalization and measurement validity

{{OPERATIONALIZATIONS}}

  • Validity applicability, reliability/repeatability, calibration, detection limits, masking, missingness, invariance/comparability, and limitations: [TO COMPLETE]

11. Design

  • Target population/system and sampling frame: [TO COMPLETE]
  • Experimental/observational unit and analysis unit: [TO COMPLETE]
  • Eligibility, recruitment/selection, and exclusions: [TO COMPLETE]
  • Intervention/exposure and comparator versions: [TO COMPLETE]
  • Allocation, randomization, concealment, and masking: [TO COMPLETE]
  • Measurement schedule and quality control: [TO COMPLETE]
  • Sample-size, precision, or information rationale with sensitivity to assumptions: [TO COMPLETE]
  • Stopping, attrition, and missing-outcome plan: [TO COMPLETE]
  • Replication, transport, and external-validation plan: [TO COMPLETE]

12. Analysis plan

{{ANALYSES}}

  • Software, environment, versions, and seeds where applicable: [TO COMPLETE]
  • Assumption diagnostics and model checks: [TO COMPLETE]
  • Full multiplicity family across hypotheses, outcomes, timepoints, subgroups, models, and looks: [TO COMPLETE]
  • Confirmatory versus exploratory outputs: [TO COMPLETE]

13. Data, code, materials, and retention

  • Provenance and versioning: [TO COMPLETE]
  • Data/code/material availability or justified restriction: [TO COMPLETE]
  • Consent, privacy, community governance, intellectual property, export-control, biosafety, and dual-use limits: [TO COMPLETE]
  • Approved storage, access, retention, and deletion: [TO COMPLETE]

14. AI and tool assistance

{{AI_USE}}

  • Named tools/versions and material influence: [TO COMPLETE IF PERMITTED]
  • Verification and disclosure plan: [TO COMPLETE]
  • Sensitive or unpublished information must remain local unless explicitly authorized for a named service and scope.

15. Deviations and amendments

{{DEVIATION_PLAN}}

For each deviation record:

  • date;
  • affected section and IDs;
  • original plan;
  • change and rationale;
  • decision owner;
  • whether target results were known;
  • expected interpretive impact;
  • whether the original analysis will still be reported.

16. Human sign-off

  • Domain expert: [NAME / DATE / STATUS]
  • Measurement expert: [NAME / DATE / STATUS]
  • Methodologist/statistician: [NAME / DATE / STATUS]
  • Ethics/safety/data/regulatory authorities as applicable: [NAME / DATE / STATUS]
  • Accountable investigator: [NAME / DATE / STATUS]

No signature turns a hypothesis into fact. Interpret results with uncertainty, rivals, boundary conditions, controls, and replication evidence.