MouseMine (Mouse Genome Informatics, InterMine-based)

Base URL

https://www.mousemine.org/mousemine/service

Auth

No auth for most queries. Free account token needed for saved lists.

Key Endpoints

Endpoint	Description
`/search?q={query}&format=json`	Keyword search across all objects
`/template/results?name={template}&op1=LOOKUP&value1={value}&format=json`	Run pre-built template query
`/query/results` (POST)	Run custom PathQuery (XML)
`/model`	Retrieve data model

Example Calls

# Keyword search for Brca1
https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json

# Template: Gene → GO terms
https://www.mousemine.org/mousemine/service/template/results?name=Gene_GO&op1=LOOKUP&value1=Pax6&format=json

Custom Query (POST)

POST /query/results
Content-Type: application/x-www-form-urlencoded
query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json

Response Format

JSON: {"results": [...], "statusCode": 200}. Also supports XML, TSV, CSV via format param.

Rate Limits

No published limits. Be reasonable.